This workshop intends to bring together researchers from different research areas such as bioinformatics, biostatistics and systems biology, who are interested in modeling and analysis of biological systems or in the development of statistical methods with applications in biology and medicine. See also the flyer.
List of keynote speakers:
Registration is closed.
|Thursday, Oct. 11|
|12:30||Session I: Dynamic models in biology (Chair: Nicole Radde)||Identification of metabolic network models from high-throughput|
|12:30-13:25||Keynote: Hidde de Jong||Identification of metabolic network models from high-throughput|
|13:25-13:45||Navid Bazzazzadeh||Identification of the temporal dynamics of biological processes|
|13:45-14:05||Steffen Waldherr||Dynamic modeling reveals robustness mechanism via sensitivity regulation in the TRPV1 ion channel|
|14:05-14:25||Jens Keienburg||Quantitative Modeling of the temperature control mechanism in a molecular clock|
|14:25-16:00||Poster session I + coffee|
|16:00||Session II: Computational Immunology (Chair: Ingo Röder)|
|16:00-16:55||Keynote: Thomas Höfer||Stochastic switches in mammalian gene expression|
|16:55-17:15||Lars Kaderali||Mathematical Modeling of Hepatitis C Virus Infection|
|17:15-17:35||Gunnar Cedersund||Dynamical conclusive modeling of insulin signalling: unique predictions despite unidentifiability|
|17:35-17:55||Markus Scholz||Modeling chemotherapy outcome of diffuse large B-cell lymphoma|
|17:55-18:15||Natalie Filmann||Modeling of viral dynamics after liver transplantation in patients with chronic hepatitis B and B/D|
|18:15-18:30||Election of new leaders of the GMDS/IBS working group "Mathematical models in medicine"|
|18:30-19:30||Poster session II|
|20:00||Get together (Restaurant Amadeus, map)|
|Friday, Oct 12|
|9:00||Session III: Probabilistic Networks in Biology (Chair: Tim Beissbarth)|
|9:00-9:55||Keynote: Marco Grzegorczyk||Bayesian regularization of non-homogeneous dynamic Bayesian networks by coupling interaction parameters|
|9:55-10:15||Narsis Aftab Kiani||Network inference from dynamic perturbation data using evolutionary approach|
|10:15-10:35||Mohammad J. Sadeh||Molecular Network Reconstruction with a Safeguard against the Unknown Unknowns of Biology|
|10:35-10:55||Katrin Illner||Bayesian blind source separation for data with network structure|
|10:55-11:30||Poster session III + Coffee|
|11:30||Session IV: Statistical models for genomics (Chair: Julien Gagneur)|
|11:30-12:25||Keynote: Stephane Robin||Some Statistical Models and Algorithms for Change-Point Problems in Genomics|
|12:25-12:45||Gen Lin||Tracing the genetic shuffle - methods to uncover variations in recombination using single sperm cell data|
|12:45-13:05||Simon Anders||Statistical aspects of single-cell transcriptomics|
|13:05-13:25||Stefanie Tauber||Exploring the Sampling Universe of RNA-Seq|
|13:25-13:45||Achim Tresch||Identification of transcription states by directional Hidden Markov Models|
How to find us
We meet at the lecture hall Room 7.01, Pfaffenwaldring 7, 70569 Stuttgart of the Stuttgart University.
Stuttgart is easily reachable by high-speed train connection from most parts of Germany or by plane. The workshop location is directly opposite from the S-Bahn station "Universität" and can be reached from the Hauptbahnhof via S1-S3 (directions).
You will need to make your own accommodation arrangements.
Please contact Nicole Radde: Nicole.Radde@ist.uni-stuttgart.de.
The workshop is jointly organized by the Gmds/IBS Working Groups 'Statistical methods in bioinformatics' and 'Mathematical models in medicine' by Tim Beißbarth, Universität Göttingen; Julien Gagneur, Gene Center Munich; Nicole Radde, Universität Stuttgart; Ingo Roeder, Universität Dresden. Local organisation at University of Stuttgart is done by Nicole Radde.