Workshop
Statistical and dynamical models in biology and medicine

October 11-12, 2012, University Stuttgart


This workshop intends to bring together researchers from different research areas such as bioinformatics, biostatistics and systems biology, who are interested in modeling and analysis of biological systems or in the development of statistical methods with applications in biology and medicine. See also the flyer.

List of keynote speakers:


For the full program download the abstract book.

Registration is closed.


Preliminary Workshop program:
 Thursday, Oct. 11
12:30 Session I: Dynamic models in biology (Chair: Nicole Radde) Identification of metabolic network models from high-throughput
12:30-13:25 Keynote: Hidde de Jong Identification of metabolic network models from high-throughput
13:25-13:45 Navid Bazzazzadeh Identification of the temporal dynamics of biological processes
13:45-14:05 Steffen Waldherr Dynamic modeling reveals robustness mechanism via sensitivity regulation in the TRPV1 ion channel
14:05-14:25 Jens Keienburg Quantitative Modeling of the temperature control mechanism in a molecular clock
14:25-16:00 Poster session I + coffee  
16:00 Session II: Computational Immunology (Chair: Ingo Röder)  
16:00-16:55 Keynote: Thomas Höfer Stochastic switches in mammalian gene expression
16:55-17:15 Lars Kaderali Mathematical Modeling of Hepatitis C Virus Infection
17:15-17:35 Gunnar Cedersund Dynamical conclusive modeling of insulin signalling: unique predictions despite unidentifiability
17:35-17:55 Markus Scholz Modeling chemotherapy outcome of diffuse large B-cell lymphoma
17:55-18:15 Natalie Filmann Modeling of viral dynamics after liver transplantation in patients with chronic hepatitis B and B/D
18:15-18:30 Election of new leaders of the GMDS/IBS working group "Mathematical models in medicine"
18:30-19:30 Poster session II  
 
20:00 Get together (Restaurant Amadeus, map)  
 
 Friday, Oct 12
9:00 Session III: Probabilistic Networks in Biology (Chair: Tim Beissbarth)  
9:00-9:55 Keynote: Marco Grzegorczyk Bayesian regularization of non-homogeneous dynamic Bayesian networks by coupling interaction parameters
9:55-10:15 Narsis Aftab Kiani Network inference from dynamic perturbation data using evolutionary approach
10:15-10:35 Mohammad J. Sadeh Molecular Network Reconstruction with a Safeguard against the Unknown Unknowns of Biology
10:35-10:55 Katrin Illner Bayesian blind source separation for data with network structure
10:55-11:30 Poster session III + Coffee
 
11:30 Session IV: Statistical models for genomics (Chair: Julien Gagneur)  
11:30-12:25 Keynote: Stephane Robin Some Statistical Models and Algorithms for Change-Point Problems in Genomics
12:25-12:45 Gen Lin Tracing the genetic shuffle - methods to uncover variations in recombination using single sperm cell data
12:45-13:05 Simon Anders Statistical aspects of single-cell transcriptomics
13:05-13:25 Stefanie Tauber Exploring the Sampling Universe of RNA-Seq
13:25-13:45 Achim Tresch Identification of transcription states by directional Hidden Markov Models
13:45-13:50 Workshop closing

How to find us

We meet at the lecture hall Room 7.01, Pfaffenwaldring 7, 70569 Stuttgart of the Stuttgart University.

Stuttgart is easily reachable by high-speed train connection from most parts of Germany or by plane. The workshop location is directly opposite from the S-Bahn station "Universität" and can be reached from the Hauptbahnhof via S1-S3 (directions).

Accomodation

You will need to make your own accommodation arrangements.

Further information

Please contact Nicole Radde: Nicole.Radde@ist.uni-stuttgart.de.

The workshop is jointly organized by the Gmds/IBS Working Groups 'Statistical methods in bioinformatics' and 'Mathematical models in medicine' by Tim Beißbarth, Universität Göttingen; Julien Gagneur, Gene Center Munich; Nicole Radde, Universität Stuttgart; Ingo Roeder, Universität Dresden. Local organisation at University of Stuttgart is done by Nicole Radde.